MultiAssaySpatialExperiment-SpatialExperiment
                        MultiAssaySpatialExperiment - SpatialExperiment
                        integration
MultiAssaySpatialExperiment-class
                        MultiAssaySpatialExperiment objects
MultiAssaySpatialExperiment-combine
                        MultiAssaySpatialExperiment combining
MultiAssaySpatialExperiment-subset
                        MultiAssaySpatialExperiment subsetting
SpatialLayerList-class
                        Spatial layer list objects
aggregateByRegion       Aggregate assay values by shape region
annotateWithRegions     Annotate points with shape regions
buildSpatialMap         Build a spatialMap table from sampleMap
checkSpatialMap         Check spatialMap consistency
labelsToShapes          Convert label rasters to polygon shapes
prepMASE                Prepare components for a
                        MultiAssaySpatialExperiment
readCSVForMASE          Read CSV Files for MASE
readCosMxMASE           Read NanoString CosMx SMI Spatial Data
readGeoJSONForMASE      Read GeoJSON Files for MASE
readGeoParquetForMASE   Read GeoParquet Files for MASE
readHDF5ForMASE         Read HDF5 Files for MASE
readMERSCOPEMASE        Read Vizgen MERSCOPE Spatial Data
readParquetForMASE      Read Parquet Files for MASE
readVisiumHDMASE        Read 10x Genomics Visium HD Spatial Data
readVisiumMASE          Read 10x Genomics Visium Spatial Data
readXeniumMASE          Read 10x Genomics Xenium Spatial Data
shapesToLabels          Rasterize polygon shapes to a label image
spatial-accessors       Access spatial element slots
spatialJoin             Spatial join between spatial layer tables
spatialMatch            Spatial match for DataFrame
spatialOverlaps         Spatial overlap predicate for DataFrame
