Protein Significance Analysis in shotgun mass spectrometry-based proteomic experiments with tandem mass tag (TMT) labeling

---

Documentation for package ‘MSstatsTMT’ version 2.21.1

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

dataProcessPlotsTMT	Visualization for explanatory data analysis - TMT experiment
designSampleSizeTMT	Planning future experimental designs of Tandem Mass Tag (TMT) experiments acquired with Data-Dependent Acquisition (DDA or shotgun)
groupComparisonTMT	Finding differentially abundant proteins across conditions in TMT experiment
input.pd	Example dataset in MSstatsTMT format.
proteinSummarization	Summarizing peptide level quantification to protein level quantification