MSstatsTMT-package	MSstatsTMT
.calculatePower	dot-calculatePower
.checkContrastMatrix	dot-checkContrastMatrix
.checkSummarizationParams	dot-checkSummarizationParams
.countRunsWithNorm	dot-countRunsWithNorm
.documentFunction	dot-documentFunction
.getMedianSigmaRun	dot-getMedianSigmaRun
.getMedianSigmaSubject	dot-getMedianSigmaSubject
.getNormalizationAbundance	dot-getNormalizationAbundance
.getNumSample	dot-getNumSample
.getRunsMedian	dot-getRunsMedian
.getVarComponentTMT	dot-getVarComponentTMT
.handleSingleContrastTMT	dot-handleSingleContrastTMT
.logSum	dot-logSum
.logSummarizationParams	dot-logSummarizationParams
.makeContrastSingleTMT	dot-makeContrastSingleTMT
.makeFactorColumnsTMT	dot-makeFactorColumnsTMT
.medianPolish	dot-medianPolish
.normalizePeptides	dot-normalizePeptides
.normalizeProteins	dot-normalizeProteins
.prepareForSummarization	dot-prepareForSummarization
.removeRedundantChannels	dot-removeRedundantChannels
.summarizeMSstats	dot-summarizeMSstats
.summarizeSimpleStat	dot-summarizeSimpleStat
.summarizeTMP	dot-summarizeTMP
.summarizeTMT	dot-summarizeTMT
dataProcessPlotsTMT	dataProcessPlotsTMT
designSampleSizeTMT	designSampleSizeTMT
getProcessedTMT	getProcessedTMT
getSummarizedTMT	getSummarizedTMT
groupComparisonTMT	groupComparisonTMT
input.pd	input.pd
MaxQtoMSstatsTMTFormat	reexports
MSstatsComparisonModelSingleTMT	MSstatsComparisonModelSingleTMT
MSstatsFitComparisonModelsTMT	MSstatsFitComparisonModelsTMT
MSstatsGroupComparisonOutputTMT	MSstatsGroupComparisonOutputTMT
MSstatsGroupComparisonTMT	MSstatsGroupComparisonTMT
MSstatsModerateTTest	MSstatsModerateTTest
MSstatsNormalizeTMT	MSstatsNormalizeTMT
MSstatsPrepareForGroupComparisonTMT	MSstatsPrepareForGroupComparisonTMT
MSstatsPrepareForSummarizationTMT	MSstatsPrepareForSummarizationTMT
MSstatsSummarizationOutputTMT	MSstatsSummarizationOutputTMT
MSstatsSummarizeTMT	MSstatsSummarizeTMT
MSstatsTestSingleProteinTMT	MSstatsTestSingleProteinTMT
MSstatsTMT	MSstatsTMT
OpenMStoMSstatsTMTFormat	reexports
PDtoMSstatsTMTFormat	reexports
PhilosophertoMSstatsTMTFormat	reexports
proteinSummarization	proteinSummarization
quant.pd.msstats	quant.pd.msstats
reexports	reexports
SpectroMinetoMSstatsTMTFormat	reexports
test.pairwise	test.pairwise
