dataProcessPlotsTMT     Visualization for explanatory data analysis -
                        TMT experiment
designSampleSizeTMT     Planning future experimental designs of Tandem
                        Mass Tag (TMT) experiments acquired with
                        Data-Dependent Acquisition (DDA or shotgun)
groupComparisonTMT      Finding differentially abundant proteins across
                        conditions in TMT experiment
input.pd                Example dataset in MSstatsTMT format.
proteinSummarization    Summarizing peptide level quantification to
                        protein level quantification
