.populateEntityInformationInDataFrame
                        Populate Entity Information in Data Frame
.validateAnnotateProteinInfoFromIndraInput
                        Validate Annotate Protein Info Input
annotateProteinInfoFromIndra
                        Annotate Protein Information from Indra
bootstrapTopicModels    Bootstrap the topic decomposition to find each
                        topic's robust top words
compareTopicModels      Test whether including PPIs changes topic
                        structure beyond random chance
cytoscapeNetwork        Render a Cytoscape network visualisation
cytoscapeNetworkOutput
                        Shiny output binding for cytoscapeNetwork
decomposeSubnetworkByTopic
                        Decompose a subnetwork into topic-specific
                        subnetworks via joint NMF
deleteEdgeFromNetwork   Delete an edge from a network edges data frame
exportNetworkToHTML     Export network data with Cytoscape
                        visualization
filterSubnetworkByContext
                        Filter a subnetwork by contextual relevance
getSubnetworkFromIndra
                        Get subnetwork from INDRA database
previewNetworkInBrowser
                        Preview network in browser
renderCytoscapeNetwork
                        Render a Cytoscape network in a Shiny
                        application. This function is used to render a
                        Cytoscape network visualization within a Shiny
                        application.
