# Generated by roxygen2: do not edit by hand

export(apply_normalizations)
export(classify_lipids)
export(correct_batch_effects)
export(create_default_contrasts)
export(create_enrichment_barplot)
export(create_enrichment_dotplot)
export(create_heatmap_robust)
export(create_lipid_expression_barplot)
export(create_pca_plot_with_ellipses)
export(create_pipeline_plot)
export(create_plsda_plot_with_ellipses)
export(create_volcano_plot_labeled)
export(determine_saturation)
export(export_classification)
export(fix_sample_alignment)
export(generate_example_data)
export(get_imputation_descriptions)
export(get_imputation_methods)
export(get_normalization_descriptions)
export(get_normalization_methods)
export(impute_missing_values)
export(launch_lipidomics_app)
export(load_custom_classification)
export(load_custom_enrichment_sets)
export(load_lipidomics_data)
export(load_lipidomics_data_from_df)
export(normalize_log2median)
export(normalize_mean)
export(normalize_median)
export(normalize_pqn)
export(normalize_quantile)
export(normalize_tic)
export(normalize_vsn)
export(perform_differential_analysis)
export(perform_enrichment_analysis)
export(perform_pca)
export(perform_plsda)
export(test_saturation_classification)
export(visualize_raw_data)
export(visualize_raw_data_improved)
importFrom(DT,dataTableOutput)
importFrom(DT,datatable)
importFrom(DT,renderDataTable)
importFrom(FactoMineR,PCA)
importFrom(dplyr,everything)
importFrom(edgeR,DGEList)
importFrom(edgeR,estimateDisp)
importFrom(edgeR,glmQLFTest)
importFrom(edgeR,glmQLFit)
importFrom(edgeR,topTags)
importFrom(fgsea,fgseaMultilevel)
importFrom(ggplot2,aes)
importFrom(ggplot2,annotate)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_histogram)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggplotGrob)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,scale_color_gradient)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_size_continuous)
importFrom(ggplot2,stat_ellipse)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,theme_void)
importFrom(ggrepel,geom_text_repel)
importFrom(grDevices,dev.cur)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(grid,grid.draw)
importFrom(grid,grid.newpage)
importFrom(gridExtra,arrangeGrob)
importFrom(gridExtra,grid.arrange)
importFrom(limma,contrasts.fit)
importFrom(limma,eBayes)
importFrom(limma,lmFit)
importFrom(limma,makeContrasts)
importFrom(limma,removeBatchEffect)
importFrom(limma,topTable)
importFrom(openxlsx,addWorksheet)
importFrom(openxlsx,createWorkbook)
importFrom(openxlsx,saveWorkbook)
importFrom(openxlsx,writeData)
importFrom(pheatmap,pheatmap)
importFrom(plotly,ggplotly)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(pls,plsr)
importFrom(rmarkdown,html_document)
importFrom(rmarkdown,pdf_document)
importFrom(rmarkdown,render)
importFrom(scales,hue_pal)
importFrom(shiny,HTML)
importFrom(shiny,actionButton)
importFrom(shiny,actionLink)
importFrom(shiny,br)
importFrom(shiny,checkboxGroupInput)
importFrom(shiny,checkboxInput)
importFrom(shiny,column)
importFrom(shiny,conditionalPanel)
importFrom(shiny,downloadButton)
importFrom(shiny,downloadHandler)
importFrom(shiny,fileInput)
importFrom(shiny,fluidRow)
importFrom(shiny,h4)
importFrom(shiny,h5)
importFrom(shiny,helpText)
importFrom(shiny,hr)
importFrom(shiny,icon)
importFrom(shiny,isolate)
importFrom(shiny,modalButton)
importFrom(shiny,modalDialog)
importFrom(shiny,numericInput)
importFrom(shiny,observe)
importFrom(shiny,observeEvent)
importFrom(shiny,p)
importFrom(shiny,plotOutput)
importFrom(shiny,radioButtons)
importFrom(shiny,reactiveValues)
importFrom(shiny,removeNotification)
importFrom(shiny,renderPlot)
importFrom(shiny,renderText)
importFrom(shiny,renderUI)
importFrom(shiny,req)
importFrom(shiny,selectInput)
importFrom(shiny,selectizeInput)
importFrom(shiny,shinyApp)
importFrom(shiny,showModal)
importFrom(shiny,showNotification)
importFrom(shiny,strong)
importFrom(shiny,tagList)
importFrom(shiny,tags)
importFrom(shiny,textAreaInput)
importFrom(shiny,textInput)
importFrom(shiny,uiOutput)
importFrom(shiny,updateCheckboxGroupInput)
importFrom(shiny,updateSelectInput)
importFrom(shiny,updateSelectizeInput)
importFrom(shiny,verbatimTextOutput)
importFrom(shinydashboard,box)
importFrom(shinydashboard,dashboardBody)
importFrom(shinydashboard,dashboardHeader)
importFrom(shinydashboard,dashboardPage)
importFrom(shinydashboard,dashboardSidebar)
importFrom(shinydashboard,menuItem)
importFrom(shinydashboard,sidebarMenu)
importFrom(shinydashboard,tabItem)
importFrom(shinydashboard,tabItems)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,reorder)
importFrom(stats,rlnorm)
importFrom(stats,rnorm)
importFrom(stats,setNames)
importFrom(stats,var)
importFrom(stringr,regex)
importFrom(stringr,str_detect)
importFrom(stringr,str_extract)
importFrom(stringr,str_extract_all)
importFrom(stringr,str_match)
importFrom(stringr,str_remove_all)
importFrom(stringr,str_trim)
importFrom(tidyr,all_of)
importFrom(tidyr,pivot_longer)
importFrom(utils,capture.output)
importFrom(utils,globalVariables)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,write.csv)
importFrom(withr,with_preserve_seed)
importFrom(withr,with_seed)
