apply_normalizations    Apply a Sequence of Normalization Methods
classify_lipids         Classify Lipids Based on Their Names
correct_batch_effects   Correct Batch Effects from a Normalised
                        Lipidomics Matrix
create_default_contrasts
                        Create Default Contrasts
create_enrichment_barplot
                        Create an Enrichment Barplot
create_enrichment_dotplot
                        Create an Enrichment Dotplot
create_heatmap_robust   Create a Robust Heatmap of Top Variable
                        Features
create_lipid_expression_barplot
                        Create a Lipid Expression Barplot Ordered by
                        Group
create_pca_plot_with_ellipses
                        Create a PCA Plot with Optional Confidence or
                        Visual Ellipses
create_pipeline_plot    Quick QC Plot for a Normalized Data Matrix
create_plsda_plot_with_ellipses
                        Create a PLS-DA Plot with Optional Ellipses
create_volcano_plot_labeled
                        Create a Volcano Plot with Optional
                        Classification Colouring
determine_saturation    Determine Fatty-Acid Saturation from a Lipid
                        Name
export_classification   Export Lipid Classification to CSV
fix_sample_alignment    Align Samples Between Data Matrix and Metadata
generate_example_data   Generate Example Dataset
get_imputation_descriptions
                        Return Human-Readable Descriptions of
                        Imputation Methods
get_imputation_methods
                        Return Available Imputation Method Names
get_normalization_descriptions
                        Return Human-Readable Descriptions of
                        Normalization Methods
get_normalization_methods
                        Return Available Normalization Method Names
impute_missing_values   Impute Missing Values in a Lipidomics Data
                        Matrix
launch_lipidomics_app   Launch the LIPIDIFy Shiny Application
load_custom_classification
                        Load Custom Lipid Classification from a CSV
                        File
load_custom_enrichment_sets
                        Load Custom Enrichment Sets from a CSV File
load_lipidomics_data    Load Lipidomics Data
load_lipidomics_data_from_df
                        Load Lipidomics Data from Data Frame
normalize_log2median    Log2 Median Centering Normalization
normalize_mean          Mean Normalization
normalize_median        Median Normalization
normalize_pqn           PQN Normalization
normalize_quantile      Quantile Normalization
normalize_tic           TIC Normalization
normalize_vsn           VSN (Variance Stabilizing Normalization)
perform_differential_analysis
                        Perform Differential Analysis
perform_enrichment_analysis
                        Perform Enrichment Analysis
perform_pca             Perform PCA Analysis
perform_plsda           Perform PLS-DA Analysis
test_saturation_classification
                        Test Saturation Classification
visualize_raw_data      Visualize Raw Data
visualize_raw_data_improved
                        Visualize Raw or Normalized Data with
                        Sample/Lipid Toggle
