# Generated by roxygen2: do not edit by hand

S3method(print,hicpotts_block_fit)
S3method(print,hicpotts_sensitivity)
S3method(print,hicpotts_validation)
export(allocation_diagnostics)
export(classify_hicpotts)
export(combine_hicpotts_blocks)
export(compute_HMRFHiC_probabilities)
export(diagnose_hicpotts_fit)
export(get_data)
export(plot_hicpotts_mcmc_by_component)
export(plot_upper_prob_lower_count)
export(posterior_predictive_hicpotts)
export(process_data)
export(relabel_hicpotts)
export(run_chain_betas)
export(summarise_hicpotts_parameters)
export(summarise_hicpotts_probabilities)
importFrom(Biostrings,DNAString)
importFrom(Biostrings,getSeq)
importFrom(Biostrings,letterFrequency)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,countOverlaps)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,seqnames)
importFrom(IRanges,IRanges)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,queryHits)
importFrom(rhdf5,h5ls)
importFrom(rhdf5,h5read)
importFrom(rlang,.data)
importFrom(rtracklayer,import)
importFrom(rtracklayer,import.chain)
importFrom(rtracklayer,liftOver)
importFrom(stats,aggregate)
importFrom(stats,dgamma)
importFrom(stats,dnbinom)
importFrom(stats,dnorm)
importFrom(stats,dpois)
importFrom(stats,rbeta)
importFrom(stats,rgamma)
importFrom(stats,rnorm)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(utils,read.table)
useDynLib(HiCPotts, .registration = TRUE)
