# Generated by roxygen2: do not edit by hand

export(buildGOmap)
export(clusterSim)
export(combineScores)
export(geneSim)
export(get_organism)
export(goSim)
export(godata)
export(load_OrgDb)
export(mclusterSim)
export(mgeneSim)
export(mgoSim)
export(parse_gff)
export(read.blast2go)
export(read.gaf)
export(set_auto_update)
export(tcss_cutoff)
export(termSim)
export(wangMethod_internal)
exportClasses(GOSemSimDATA)
importClassesFrom(AnnotationDbi,AnnotationDb)
importFrom(AnnotationDbi,
  columns,
  loadDb,
  toTable
)
importFrom(DBI,dbReadTable)
importFrom(GO.db,
  GO.db,
  GOBPANCESTOR,
  GOBPOFFSPRING,
  GOBPPARENTS,
  GOCCANCESTOR,
  GOCCOFFSPRING,
  GOCCPARENTS,
  GOMFANCESTOR,
  GOMFOFFSPRING,
  GOMFPARENTS,
  GOTERM
)
importFrom(Rcpp,evalCpp)
importFrom(digest,digest)
importFrom(methods,
  new,
  setClass,
  setMethod,
  setRefClass,
  slot
)
importFrom(rlang,check_installed)
importFrom(stats,
  na.omit,
  setNames
)
importFrom(utils,
  read.delim,
  setTxtProgressBar,
  stack,
  txtProgressBar
)
importFrom(yulab.utils,
  download_yulab_file,
  load_OrgDb,
  ls2df,
  user_dir,
  yulab_msg
)
importMethodsFrom(AnnotationDbi,as.list)
importMethodsFrom(AnnotationDbi,columns)
importMethodsFrom(AnnotationDbi,dbconn)
importMethodsFrom(AnnotationDbi,keys)
importMethodsFrom(AnnotationDbi,keytypes)
importMethodsFrom(AnnotationDbi,mget)
importMethodsFrom(AnnotationDbi,select)
importMethodsFrom(AnnotationDbi,toTable)
useDynLib(GOSemSim)
