Disease Ontology Semantic and Enrichment analysis

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Documentation for package ‘DOSE’ version 4.7.3

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

as.data.frame-method	Coerce a canonical interpretation result to a data.frame
clusterSim	clusterSim
computeIC	compute information content
DataSet	Datasets
doseInterpretResult	Construct a canonical interpretation result
doseInterpretResult-class	Canonical interpretation result class
doseSim	doseSim
dose_params	Shared parameters for DOSE functions
doSim	doseSim
enrichDO	DO Enrichment Analysis
enrichNCG	enrichNCG
evidence	Filter evidence rows from a canonical interpretation result
evidence-method	Filter evidence rows from a canonical interpretation result
explainDisease	Add evidence-grounded explanation text to a canonical interpretation result
gene2DO	convert Gene ID to DO Terms
geneList	Datasets
geneSim	geneSim
gseDO	DO Gene Set Enrichment Analysis
gseNCG	NCG Gene Set Enrichment Analysis
interpretDisease	High-level disease interpretation entry point
mclusterSim	mclusterSim
rankMouseModels	Rank mouse disease models from human query genes
show-method	Show a canonical interpretation result
simplot	simplot
summary-method	Summarize a canonical interpretation result
theme_dose	theme_dose