DataSet                 Datasets
as.data.frame,doseInterpretResult-method
                        Coerce a canonical interpretation result to a
                        data.frame
clusterSim              clusterSim
computeIC               compute information content
doseInterpretResult     Construct a canonical interpretation result
doseInterpretResult-class
                        Canonical interpretation result class
doseSim                 doseSim
dose_params             Shared parameters for DOSE functions
enrichDO                DO Enrichment Analysis
enrichNCG               enrichNCG
evidence                Filter evidence rows from a canonical
                        interpretation result
explainDisease          Add evidence-grounded explanation text to a
                        canonical interpretation result
gene2DO                 convert Gene ID to DO Terms
geneSim                 geneSim
gseDO                   DO Gene Set Enrichment Analysis
gseNCG                  NCG Gene Set Enrichment Analysis
interpretDisease        High-level disease interpretation entry point
mclusterSim             mclusterSim
rankMouseModels         Rank mouse disease models from human query
                        genes
show,doseInterpretResult-method
                        Show a canonical interpretation result
simplot                 simplot
summary,doseInterpretResult-method
                        Summarize a canonical interpretation result
theme_dose              theme_dose
