# Generated by roxygen2: do not edit by hand

export(CySA_default_cluster_cols)
export(CySA_example_sce)
export(clusterSelector)
export(plotCytoScatter)
export(plotSOMScatter)
export(prepClusterSelector)
export(prepClusterSelectorData)
import(ggplot2)
import(shiny)
importFrom(CATALYST,channels)
importFrom(CATALYST,cluster_codes)
importFrom(CATALYST,cluster_ids)
importFrom(DT,DTOutput)
importFrom(DT,renderDT)
importFrom(Matrix,rowSums)
importFrom(RColorBrewer,brewer.pal)
importFrom(Rtsne,Rtsne)
importFrom(S4Vectors,metadata)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,int_colData)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(collapsibleTree,collapsibleTreeOutput)
importFrom(collapsibleTree,renderCollapsibleTree)
importFrom(cowplot,theme_cowplot)
importFrom(data.table,rbindlist)
importFrom(dplyr,`%>%`)
importFrom(dplyr,as_tibble)
importFrom(dplyr,count)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,join_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,pull)
importFrom(dplyr,summarise)
importFrom(dplyr,ungroup)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_color_gradientn)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_gradientn)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,vars)
importFrom(ggplot2,ylab)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(graphics,points)
importFrom(grid,unit)
importFrom(plotly,add_trace)
importFrom(plotly,config)
importFrom(plotly,event_data)
importFrom(plotly,event_register)
importFrom(plotly,ggplotly)
importFrom(plotly,layout)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(purrr,imap)
importFrom(purrr,is_empty)
importFrom(purrr,map2)
importFrom(purrr,set_names)
importFrom(raster,plot)
importFrom(reshape2,melt)
importFrom(rlang,.data)
importFrom(rlang,sym)
importFrom(shinydashboard,dashboardBody)
importFrom(shinydashboard,dashboardHeader)
importFrom(shinydashboard,dashboardPage)
importFrom(shinydashboard,dashboardSidebar)
importFrom(shinydashboard,menuItem)
importFrom(shinydashboard,sidebarMenu)
importFrom(shinyjs,extendShinyjs)
importFrom(shinyjs,useShinyjs)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,reorder)
importFrom(stats,sd)
importFrom(stats,setNames)
importFrom(stats,t.test)
importFrom(stringr,str_replace)
importFrom(stringr,str_split)
importFrom(tibble,as_tibble)
importFrom(tidyr,all_of)
importFrom(tidyr,pivot_longer)
importFrom(tidyselect,all_of)
importFrom(umap,umap)
importFrom(umap,umap.defaults)
importFrom(utils,globalVariables)
importFrom(utils,head)
importFrom(utils,str)
importFrom(viridis,scale_fill_viridis)
importFrom(viridis,viridis)
