ExpressionNormalizationWorkflow
Gene Expression Normalization Workflow
Bioconductor version: 3.23 · Package version: 1.38.0
An extensive, customized expression normalization workflow incorporating Supervised Normalization of Microarryas(SNM), Surrogate Variable Analysis(SVA) and Principal Variance Component Analysis to identify batch effects and remove them from the expression data to enhance the ability to detect the underlying biological signals.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ExpressionNormalizationWorkflow")Details
| Maintainer | Karthikeyan Murugesan <karthikeyanm60@yahoo.com> |
| Author | Karthikeyan Murugesan [aut, cre], Greg Gibson [sad, ths] |
| License | GPL (>=3) |
| Bug Reports | https://github.com/ |
| Downloads rank | 128 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneExpressionWorkflow, ImmunoOncologyWorkflow, Workflow |
Download
Follow the installation instructions to use this package in your R session.
| Source package | ExpressionNormalizationWorkflow_1.38.0.tar.gz |
Dependencies
Imports: Biobase (>= 2.24.0), limma (>= 3.20.9), lme4 (>= 1.1.7), matrixStats (>= 0.10.3), pvca (>= 1.4.0), snm (>= 1.12.0), sva (>= 3.10.0), vsn (>= 3.32.0)