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tximportData

tximportData

Bioconductor version: 3.23 · Package version: 1.40.0

This package provides the output of running various transcript abundance quantifiers on a set of 6 RNA-seq samples from the GEUVADIS project. The quantifiers were Cufflinks, RSEM, kallisto, Salmon and Sailfish. alevin example output is also included. Forr details on version numbers, sample information, and details on calls, see the package vignette.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("tximportData")

Details

MaintainerMichael Love <michaelisaiahlove@gmail.com>
AuthorMichael Love
LicenseGPL (>= 2)
Downloads rank1263
Source branchRELEASE_3_23
biocViewsExperimentData, RNASeqData, SequencingData

Download

Follow the installation instructions to use this package in your R session.

Source packagetximportData_1.40.0.tar.gz
Dependencies

Suggests: knitr, markdown

Reverse dependencies

Imports Me (1): TDbasedUFE

Suggests Me (6): DESeq2, eds, fishpond, tximeta, tximport, variancePartition