tissueTreg
TWGBS and RNA-seq data from tissue T regulatory cells from mice
Bioconductor version: 3.23 · Package version: 1.32.0
The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("tissueTreg") Details
| Maintainer | Charles Imbusch <c.imbusch@dkfz.de> |
| Author | Charles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut] |
| License | GPL (>= 2) |
| URL | https://github.com/cimbusch/tissueTreg |
| Downloads rank | 217 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue |
Download
Follow the installation instructions to use this package in your R session.
| Source package | tissueTreg_1.32.0.tar.gz |
Dependencies
Depends: R (>= 3.5)
Suggests: BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment, ggplot2, reshape2
Reverse dependencies
Suggests Me (1): DMRcate