simpIntLists
The package contains BioGRID interactions for various organisms in a simple format
Bioconductor version: 3.23 · Package version: 1.48.0
The package contains BioGRID interactions for arabidopsis(thale cress), c.elegans, fruit fly, human, mouse, yeast( budding yeast ) and S.pombe (fission yeast) . Entrez ids, official names and unique ids can be used to find proteins. The format of interactions are lists. For each gene/protein, there is an entry in the list with "name" containing name of the gene/protein and "interactors" containing the list of genes/proteins interacting with it.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("simpIntLists") Details
| Maintainer | Kircicegi Korkmaz <e102771@ceng.metu.edu.tr> |
| Author | Kircicegi Korkmaz, Volkan Atalay, Rengul Cetin-Atalay |
| License | GPL (>= 2) |
| Downloads rank | 212 |
| Source branch | RELEASE_3_23 |
| biocViews | Arabidopsis_thaliana_Data, ExperimentData |
Download
Follow the installation instructions to use this package in your R session.
| Source package | simpIntLists_1.48.0.tar.gz |
Reverse dependencies
Depends On Me (1): ibh