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nullrangesData

ExperimentHub datasets for the nullranges package

Bioconductor version: 3.23 · Package version: 1.18.0

Provides datasets for the nullranges package vignette, in particular example datasets for DNase hypersensitivity sites (DHS), CTCF binding sites, and CTCF genomic interactions. These are used to demonstrate generation of null hypothesis feature sets, either through block bootstrapping or matching, in the nullranges vignette. For more details, see the data object man pages, and the R scripts for object construction provided within the package.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nullrangesData")

Details

MaintainerMichael Love <michaelisaiahlove@gmail.com>
AuthorMichael Love [aut, cre] (ORCID: <https://orcid.org/0000-0001-8401-0545>), Wancen Mu [aut] (ORCID: <https://orcid.org/0000-0002-5061-7581>), Eric Davis [aut] (ORCID: <https://orcid.org/0000-0003-4051-3217>), Mikhail Dozmorov [aut]
LicenseGPL-3
Downloads rank169
Source branchRELEASE_3_23
biocViewsChIPSeqData, ENCODE, ExperimentData, ExperimentHub, Homo_sapiens_Data, SequencingData

Download

Follow the installation instructions to use this package in your R session.

Source packagenullrangesData_1.18.0.tar.gz
Dependencies

Depends: R (>= 4.1.0), ExperimentHub, GenomicRanges, InteractionSet

Imports: utils

Suggests: knitr, rmarkdown

Reverse dependencies

Suggests Me (2): iSEEhub, nullranges