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HD2013SGI

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

Bioconductor version: 3.23 · Package version: 1.52.0

This package contains the experimental data and a complete executable transcript (vignette) of the analysis of the HCT116 genetic interaction matrix presented in the paper "Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping" by C. Laufer, B. Fischer, M. Billmann, W. Huber, M. Boutros; Nature Methods (2013) 10:427-31. doi: 10.1038/nmeth.2436.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HD2013SGI")

Details

MaintainerMike Smith <mike.smith@embl.de>
AuthorBernd Fischer
LicenseArtistic-2.0
System RequirementsGNU make
Downloads rank210
Source branchRELEASE_3_23
biocViewsCancerData, CellCulture, ColonCancerData, ExperimentData, HighThroughputImagingData, Homo_sapiens_Data, MicrotitrePlateAssayData

Download

Follow the installation instructions to use this package in your R session.

Source packageHD2013SGI_1.52.0.tar.gz
Dependencies

Depends: R (>= 2.10.0), RColorBrewer, gplots, geneplotter, splots, limma, vcd, LSD, EBImage

Suggests: BiocStyle

Reverse dependencies

Suggests Me (1): splots