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org.Hs.eg.db

Genome wide annotation for Human

Bioconductor version: 3.23 · Package version: 3.23.1

Genome wide annotation for Human, primarily based on mapping using Entrez Gene identifiers.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("org.Hs.eg.db")

Details

MaintainerBioconductor Package Maintainer <maintainer@bioconductor.org>
AuthorMarc Carlson
LicenseArtistic-2.0
Downloads rank28139
Source branchRELEASE_3_23
biocViewsAnnotationData, Homo_sapiens, OrgDb, humanLLMappings

Download

Follow the installation instructions to use this package in your R session.

Source packageorg.Hs.eg.db_3.23.1.tar.gz
Dependencies

Depends: R (>= 2.7.0), methods, AnnotationDbi (>= 1.73.0)

Suggests: DBI, annotate, RUnit

Reverse dependencies

Depends On Me (90): annotation, clariomdhumanprobeset.db, clariomdhumantranscriptcluster.db, clariomshumanhttranscriptcluster.db, clariomshumantranscriptcluster.db, CoCiteStats, FDb.InfiniumMethylation.hg18, FDb.InfiniumMethylation.hg19, GGHumanMethCancerPanelv1.db, GSReg, h10kcod.db, h20kcod.db, hcg110.db, hgfocus.db, hgu133a.db, hgu133a2.db, hgu133b.db, hgu133plus2.db, hgu219.db, hgu95a.db, hgu95av2.db, hgu95b.db, hgu95c.db, hgu95d.db, hgu95e.db, hguatlas13k.db, hgubeta7.db, hguDKFZ31.db, hgug4100a.db, hgug4101a.db, hgug4110b.db, hgug4111a.db, hgug4112a.db, hgug4845a.db, hguqiagenv3.db, hi16cod.db, Homo.sapiens, hs25kresogen.db, Hs6UG171.db, HsAgilentDesign026652.db, hta20probeset.db, hta20transcriptcluster.db, hthgu133a.db, hthgu133b.db, hthgu133plusa.db, hthgu133plusb.db, hthgu133pluspm.db, hu35ksuba.db, hu35ksubb.db, hu35ksubc.db, hu35ksubd.db, hu6800.db, huex10stprobeset.db, huex10sttranscriptcluster.db, hugene10stprobeset.db, hugene10sttranscriptcluster.db, hugene11stprobeset.db, hugene11sttranscriptcluster.db, hugene20stprobeset.db, hugene20sttranscriptcluster.db, hugene21stprobeset.db, hugene21sttranscriptcluster.db, HuO22.db, hwgcod.db, IlluminaHumanMethylation27k.db, illuminaHumanv1.db, illuminaHumanv2.db, illuminaHumanv2BeadID.db, illuminaHumanv3.db, illuminaHumanv4.db, illuminaHumanWGDASLv3.db, illuminaHumanWGDASLv4.db, JazaeriMetaData.db, KEGGlincs, LAPOINTE.db, lumiHumanAll.db, Norway981.db, nugohs1a520180.db, OperonHumanV3.db, PartheenMetaData.db, pedbarrayv10.db, pedbarrayv9.db, POCRCannotation.db, rnaseqGene, Roberts2005Annotation.db, SHDZ.db, signatureSearch, tRanslatome, u133x3p.db, variants

Imports Me (66): APL, artMS, attract, bioCancer, BioNAR, CaMutQC, CBNplot, cellity, chimeraviz, chipenrich, consICA, CoSIA, debrowser, DegCre, EasyCellType, EGSEA, famat, fourSynergy, funOmics, GDCRNATools, geneAttribution, GenomicState, gINTomics, GmicR, goatea, GOpro, goSorensen, mastR, MCbiclust, MetaboSignal, methylGSA, mirIntegrator, miRLAB, miRSM, miRspongeR, missMethyl, mitology, Moonlight2R, MOSClip, msigdb, mslp, netZooR, OutSplice, PanomiR, pathview, postNet, profileplyr, rCGH, recountWorkflow, REMP, rGREAT, rgsepd, RNAAgeCalc, rTRMui, scafari, scPipe, SGCP, signifinder, SMITE, SomaScan.db, sSNAPPY, SubCellBarCode, SVMDO, TFEA.ChIP, TFutils, uncoverappLib

Suggests Me (186): AllelicImbalance, annotate, AnnotationDbi, AnnotationFilter, AnnotationForge, annotatr, appreci8R, ASURAT, autonomics, BaseSet, BioCor, BiocSet, BioQC, BloodCancerMultiOmics2017, borealis, bumphunter, carnation, categoryCompare, CeTF, chipenrich.data, ChIPpeakAnno, ChIPseeker, clusterProfiler, cnvGSA, CNVRanger, conos, convertid, coreheat, CRISPRseek, DeeDeeExperiment, derfinderPlot, diffwrap, DIscBIO, dmGsea, dmrseq, DOSE, DOTSeq, driveR, easyEWAS, easylabel, edgeR, EnhancedVolcano, enhancerHomologSearch, enrichplot, EpiCompare, EpiMix, epiRomics, epiSeeker, esATAC, ExpHunterSuite, FELLA, fishpond, FRASER, GA4GHclient, GA4GHshiny, gage, gCrisprTools, GeDi, GeneNetworkBuilder, GeneTonic, GenomicFeatures, GenomicInteractionNodes, geomeTriD, GeoTcgaData, gg4way, globaltest, gmapR, GOaGO, goat, goProfiles, GOSemSim, goseq, GOstats, GRaNIE, graphite, groHMM, GSAR, GSEABase, GSVA, GUIDEseq, gwascat, hpar, ideal, iNETgrate, InteractiveComplexHeatmap, IOBR, iSEEde, iSEEpathways, iSEEu, ivolcano, karyoploteR, KEGGgraph, kernscr, limma, linkSet, lisat, locuszoomr, MesKit, metaMA, MIRit, miRNAtap, MLP, mogsa, MosaiClusteR, mosdef, multiGSEA, NanoMethViz, NetActivity, netgsa, NetSAM, NetSurvProx, NoRCE, oncoPredict, ontoProc, oppar, Organism.dplyr, OUTRIDER, pageRank, pagoda2, PANACEA, pathfindR, pathlinkR, PathwayVote, pcaExplorer, PCAtools, phantasus, Pigengene, plotgardener, pQTLdata, prostateCancerTaylor, ProteoDisco, protr, PureCN, quantiseqr, R3CPET, ramr, RCPA, ReactomePA, recount, RFGeneRank, RFLOMICS, RforProteomics, rigvf, rliger, RnBeads, rrvgo, RTopper, rtracklayer, rTRM, scde, scFeatures, scGPS, scGraphVerse, scmeth, scPairs, SCpubr, scQTLtools, SEMgraph, SEMPLR, SigFuge, simona, SingleCellAlleleExperiment, SNPassoc, SOMNiBUS, spatialHeatmap, SPICEY, SpliceImpactR, SurprisalAnalysis, svaRetro, TCGAutils, tenXplore, tidybulk, tinyarray, trackViewer, tricycle, UKBAnalytica, Ularcirc, UMI4Cats, VariantFiltering, VariantTools, vissE, VISTA, WayFindR, wiggleplotr, wikiprofiler, XYomics