BSgenome.Mmusculus.UCSC.mm10

Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)

Bioconductor version: 3.23 · Package version: 1.4.3

Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, based on GRCm38.p6) and stored in Biostrings objects.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Mmusculus.UCSC.mm10")

Maintainer	Bioconductor Package Maintainer <maintainer@bioconductor.org>
Author	The Bioconductor Dev Team
License	Artistic-2.0
Downloads rank	2069
Source branch	RELEASE_3_23
biocViews	AnnotationData, BSgenome, Genetics, Mus_musculus

Follow the installation instructions to use this package in your R session.

Source package

Dependencies

Depends: R (>= 3.5.0), BSgenome (>= 1.60.0)

Imports: BSgenome

Reverse dependencies

Depends On Me (1): BSgenome.Mmusculus.UCSC.mm10.masked

Imports Me (4): BSgenome.Mmusculus.UCSC.mm10.masked, epiregulon, GeneStructureTools, musicatk

Suggests Me (28): ActiveDriverWGS, BSgenome, circRNAprofiler, cliProfiler, crisprDesign, CRISPRseek, enhancerHomologSearch, EpiCompare, factR, gcapc, GenomicRanges, GRaNIE, HiCDCPlus, InPAS, m6Aboost, MiRaGE, monaLisa, Motif2Site, MotifPeeker, mSigSpectra, multicrispr, MutSeqR, NADfinder, periodicDNA, plyinteractions, scanMiRApp, scmeth, SCOPE