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BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor

Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12) with injected minor alleles (dbSNP151)

Bioconductor version: 3.23 · Package version: 0.0.9999

Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Full genome sequences for Homo sapiens (Human) as provided by UCSC (hg38, based on GRCh38.p12) with minor alleles injected from dbSNP151, and stored in Biostrings objects. Only common single nucleotide variants (SNVs) with at least one alternate allele with frequency greater than 0.01 were considered. For SNVs with more than 1 alternate allele, the most frequent allele was chosen as the minor allele to be injected into the reference genome.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor")

Details

MaintainerJean-Philippe Fortin <fortin946@gmail.com>
AuthorJean-Philippe Fortin
LicenseCC BY-NC-ND 4.0
Downloads rank69
Source branchRELEASE_3_23
biocViewsAnnotationData, BSgenome, Genetics, Homo_sapiens

Download

Follow the installation instructions to use this package in your R session.

Source packageBSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor_0.0.9999.tar.gz
Dependencies

Depends: R (>= 3.5.0), BSgenome (>= 1.56.0)

Suggests: BSgenome.Hsapiens.UCSC.hg38, BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major, testthat

Reverse dependencies

Suggests Me (1): BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major