# Generated by roxygen2: do not edit by hand

export(aggregateCodPot)
export(annotateInteractions)
export(bestTool)
export(bestToolAtleast)
export(bestToolCombination)
export(calculateCM)
export(createTrainTestSets)
export(evaluateToolCombinations)
export(evaluateToolsThresholds)
export(findCisInteractions)
export(findTransInteractions)
export(getBiotypes)
export(getGtfStats)
export(plotClockMetrics)
export(plotRadarMetrics)
export(plotSankeyInteractions)
export(plotVennCodPot)
export(prepareEvaluationSets)
importFrom(GenomicRanges,GRanges)
importFrom(Hmisc,rcorr)
importFrom(Polychrome,createPalette)
importFrom(S4Vectors,DataFrame)
importFrom(fmsb,radarchart)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_polar)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,margin)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,unit)
importFrom(ggplot2,ylim)
importFrom(grDevices,rgb)
importFrom(graphics,legend)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(patchwork,plot_layout)
importFrom(patchwork,wrap_plots)
importFrom(plotly,layout)
importFrom(plotly,plot_ly)
importFrom(scales,alpha)
importFrom(stats,binom.test)
importFrom(stats,mcnemar.test)
importFrom(stats,setNames)
importFrom(stringr,str_wrap)
importFrom(tidyr,pivot_longer)
importFrom(utils,combn)
importFrom(utils,read.csv2)
importFrom(utils,read.table)
importFrom(utils,write.csv2)
importFrom(utils,write.table)
