Changes in version 2026-04-23 (2026-04-23) - add support for generation of day0 template for tdd files Changes in version 2026-04-13 (2026-04-13) - migrate from qs to qs2 package (qs::qread → qs2::qs_read, qs::qsave → qs2::qs_save) - update test data and reference file extensions from .qs to .qs2 Changes in version 2026-04-07 (2026-04-07) - add support for excel format of new envision data Changes in version 2026-02-25 (2026-02-25) - add support for multi-plate new envision format Changes in version 2026-02-16 (2026-02-16) - fix stack imbalance warnings during byte-compilation Changes in version 2025-12-27 (2025-12-27) - extend support for csv EnVision format Changes in version 2025-12-17 (2025-12-17) - add support broad_id in PRISM data - add suport for combo data in private prism data Changes in version 2025-12-10 (2025-12-10) - make barcode detection more robust (Incucyte) Changes in version 2025-11-26 (2025-11-26) - add support for Incucyte data Changes in version 2025-11-17 (2025-11-17) - add support for new EnVision format Changes in version 2025-10-30 (2025-10-30) - synchronize Bioconductor and GitHub versioning Changes in version 2025-08-12 (2025-08-12) - fix usage of ifelse Changes in version 2025-07-17 (2025-07-17) - remove run suffix in the PRISM data Changes in version 2025-07-10 (2025-07-10) - add support for new format of private PRISM data Changes in version 2025-05-15 (2025-05-15) - add support for depmap public PRISM data Changes in version 2025-04-16 (2025-04-16) - synchronize Bioconductor and GitHub versioning Changes in version 2025-04-10 (2025-04-10) - replace with_mock with with_mocked_bindings Changes in version 2025-03-26 (2025-03-26) - unify support for using OncotreeLineage for PRISM level 5 and level 6 Changes in version 2025-03-12 (2025-03-12) - add support for using OncotreeLineage as a tissue annotation if available in PRISM data Changes in version 2025-02-18 (2025-02-18) - update extracting Tissue information for cell lines in PRISM data Changes in version 2025-02-07 (2025-02-07) - extract Tissue information for cell lines in PRISM data Changes in version 2025-02-04 (2025-02-04) - update error messages, to make them less confusing Changes in version 2025-01-11 (2025-01-11) - take into account run in public PRISM data Changes in version 2024-12-09 (2024-12-09) - support Duration in old private PRISM data format Changes in version 2024-12-04 (2024-12-04) - support old private PRISM data format Changes in version 2024-11-06 (2024-11-06) - fix invalid moa for PRISM data Changes in version 2024-11-05 (2024-11-05) - synchronize Bioconductor and GitHub versioning Changes in version 2024-10-22 (2024-10-22) - fix test for load_files Changes in version 2024-08-29 (2024-08-29) - fix failing github page Changes in version 2024-08-12 (2024-08-12) - update function for importing public PRISM data Changes in version 2024-07-03 (2024-07-03) - fix a bug with incorrect recognition of input file types Changes in version 2024-05-27 (2024-05-27) - synchronize Bioconductor and GitHub versioning Changes in version 2024-05-21 (2024-05-21) - move functions for importing PRISM data Changes in version 2024-05-08 (2024-05-08) - fix typo Changes in version 2024-04-08 (2024-04-08) - change output of get_exception_data to data.table Changes in version 2024-03-26 (2024-03-26) - fix issue with reading tsv files Changes in version 2024-03-07 (2024-03-07) - clean up the package Changes in version 2024-02-26 (2024-02-26) - improve pkgdown site - improved references - valid NEWS.md Changes in version 2024-02-14 (2024-02-14) - make documentation compatible with pkdgdown Changes in version 2024-01-22 (2024-01-22) - add new description fields Changes in version 2023-12-19 (2023-12-19) - update package vignette Changes in version 2023-12-01 (2023-12-01) - update validation function used during data submission Changes in version 2023-11-22 (2023-11-22) - sync main with devel branch - add "Treatment" as template identifier Changes in version 2023-10-24 (2023-10-24) - release Bioc 3.18 - prerelease Bioc 3.18 Changes in version 2023-10-17 (2023-10-17) - adjust NEWS to Bioc format Changes in version 2023-10-02 (2023-10-02) - add functions & unit tests for converting gDR MAE to PSet Changes in version 2023-09-22 (2023-09-22) - correct plate size calculation Changes in version 2023-09-20 (2023-09-20) - set barcode as character in the manifest file Changes in version 2023-09-14 (2023-09-14) - disable support for 'xls' file format due to crashes Changes in version 2023-08-25 (2023-08-25) - refactor subsetting of data.table using colname Changes in version 2023-07-19 (2023-07-19) - update warning messages Changes in version 2023-07-02 (2023-07-02) - add BiocStyle Changes in version 2023-06-27 (2023-06-27) - add exception entry for invalid average dose-response data Changes in version 2023-06-23 (2023-06-23) - increase compression level - Tavor_2020.qs; < 5MB limit Changes in version 2023-06-22 (2023-06-22) - replaced rds with qs Changes in version 2023-06-13 (2023-06-13) - switch from merge to [[ Changes in version 2023-06-05 (2023-06-05) - replaced reshape2 functions by functions from data.table Changes in version 2023-05-24 (2023-05-24) - format the vignette with BiocStyle Changes in version 2023-05-16 (2023-05-16) - data.frame => data.table switch - next round of changes Changes in version 2023-05-04 (2023-05-04) - switch from tibble to data.table in excel files Changes in version 2023-04-25 (2023-04-25) - refactor tibble, data.frame --> data.table Changes in version 2023-04-20 (2023-04-20) - switch to OSI license - clean-up vignette Changes in version 2023-04-19 (2023-04-19) - add object S4 gdr_test_data - mocked PSets tests Changes in version 2023-04-17 (2023-04-17) - add R 4.2 as dependency - bugfix for Pset-related tests and examples - reset identifiers Changes in version 2023-04-13 (2023-04-13) - add minor improvements - BiocCheck compatibility Changes in version 2023-04-11 (2023-04-11) - add support for PharmacoGx Changes in version 2023-04-07 (2023-04-07) - update maintainer Changes in version 2023-03-24 (2023-03-24) - make the package Bioc-compatible Changes in version 2023-03-01 (2023-03-01) - remove obsolete code Changes in version 2023-02-14 (2023-02-14) - add tests for check_metadata_names Changes in version 2023-01-23 (2023-01-23) - add function for detecting format of raw data Changes in version 2022-12-20 (2022-12-20) - add exceptions for missing drugs' and cell lines' annotations Changes in version 2022-12-14 (2022-12-14) - make exception tests more robust Changes in version 2022-12-13 (2022-12-13) - add additional error message for handling data in gDRin Changes in version 2022-11-02 (2022-11-02) - add exception table and getter and update exceptions in load_files.R Changes in version 2022-10-26 (2022-10-26) - fix bug with reading two untreated templates Changes in version 2022-10-17 (2022-10-17) - add missing namespace and add unit tests for correct_template_sheets Changes in version 2022-10-06 (2022-10-06) - extend logic for correcting template data - II Changes in version 2022-10-04 (2022-10-04) - extend logic for correcting manifest and template data Changes in version 2022-09-12 (2022-09-12) - extend the logic for filling empty cols in plate design Changes in version 2022-07-28 (2022-07-28) - change the logic for identification plates using more versatile solution Changes in version 2022-07-27 (2022-07-27) - add assert for templates without untreated controls Changes in version 2022-07-06 (2022-07-06) - reduce warnings and get rid of apply- Changes in version 2022-06-17 (2022-06-17) - modify the logic for detecting empty columns Changes in version 2022-06-15 (2022-06-15) - extend the logic for loading EnVision data for other plate size Changes in version 2022-06-03 (2022-06-03) - add support to load drug doses from D300 .tdd files Changes in version 2022-06-02 (2022-06-02) - release Changes in version 2022-05-18 (2022-05-18) - add load_results_Tecan - add tests for load_results_Tecan Changes in version 2022-04-21 (2022-04-21) - fix unit tests Changes in version 2022-03-30 (2022-03-30) - add support for Plate as an equivalent of Barcode Changes in version 2022-03-24 (2022-03-24) - fix hardcoded identifiers - update error message for custom column names Changes in version 2021-09-10 (2021-09-10) - switch from get_identifier to get_env_identifiers Changes in version 2021-08-24 (2021-08-24) - fix wrong argument in convert_se_assay_to_dt Changes in version 2021-07-23 (2021-07-23) - 's/assay_to_dt/convert_se_assay_to_dt/' in write_ref_data_se - fix linter issues - knitr as Suggested package Changes in version 2021-07-06 (2021-07-06) - remove nested repo structure Changes in version 2021-06-28 (2021-06-28) - restore functions for reading reference data - add unit tests Changes in version 2021-06-25 (2021-06-25) - add exemplary EnVision data - move functions related to reading template from gDRcore package - code refactor using lintr Changes in version 2021-06-22 (2021-06-22) - initial release - importing fucntions moved from gDRcore package