Changes in version 0.99.3                        

  - Update vignettes for interoperability with sce to create sce object
    within rather than loading from qs2 object.
  - Removed sce q2 object from inst/extdata.

                       Changes in version 0.99.2                        

  - Moved data for vignettes to inst/extdata and update vignettes
    accordingly.
  - Added scripts to generate files in inst/extdata and a README to inst
    folder.
  - Updated qs object for vignettes to qs2 object.
  - Minor change in runSuperCellCyto to use sprintf to print warning
    message.

                       Changes in version 0.99.1                        

  - Changed paste to sprintf for warning messages.
  - Moved example data to inst/extdata and update vignettes.
  - Add chunk labels to vignettes.

                       Changes in version 0.99.0                        

Major changes

  - Added support to use median when recomputing supercells.
  - Introduced n_pc parameter to allow users to specify the number of
    principal components to use in the PCA step when computing
    supercells.
  - Added utils.R file to contain utility functions that are commonly
    used.

Minor changes

  - Cleaned up functions and added improvements to the codebase, in
    accordance with the Bioconductor package development guidelines.
  - Updated vignettes to BiocStyle.
  - Added more tests.

                        Changes in version 0.1.0                        

This is the first release of SuperCellCyto.

This is also the version of SuperCellCyto that was used in our preprint:

@article{
    putri2023supercellcyto,
    title={SuperCellCyto: enabling efficient analysis of large scale cytometry datasets},
    author={Putri, Givanna H and Howitt, George and Marsh-Wakefield, Felix and Ashhurst, Thomas Myles and Phipson, Belinda},
    journal={bioRxiv},
    pages={2023--08},
    year={2023},
    publisher={Cold Spring Harbor Laboratory}
}