Changes in version 1.99.5                        

BUG FIXES

  - Fixed vignette rebuild error with pulsar >= 0.3.13: resolve the
    estimation function before passing to pulsar() - this avoids lazy
    match.fun evaluation that fails on PSOCK cluster workers.

INFRASTRUCTURE

  - Removed obsolete CXX_STD = CXX11 from src/Makevars (R >= 4.6
    defaults to C++20)
  - Fixed .Rbuildignore to exclude leftover vignettes/figure directory
    from knitr

                       Changes in version 1.99.4                        

BUG FIXES

  - Fixed vignette build failure caused by makeCluster(4, type = "SOCK")
    requiring unavailable snow package
  - Replaced broken snow cluster example with reference to batch.pulsar
    with conffile='snow'
  - Set batch mode vignette chunks to eval=FALSE to avoid build failures
    on systems without batchtools infrastructure

                       Changes in version 1.99.3                        

BUG FIXES

  - Fixed BugReports URL in DESCRIPTION (removed double slash)
  - Replaced sapply with vapply in R/fitdistr.R for improved type
    stability
  - Fixed incomplete final line in .Rbuildignore file

IMPROVEMENTS

  - Added BiocManager installation instructions to main vignette
  - Added runnable examples to man pages for getOptInd, robustPCA,
    stars.roc, and triu functions
  - Cleaned up promotional language in NEWS entries
  - Removed unused inst/extdata files to reduce package size

INFRASTRUCTURE

  - Added .registration = TRUE to useDynLib in NAMESPACE
  - Updated package version to 0.99.2 for Bioconductor submission
  - Verified vignette runtime compliance with Bioconductor guidelines

                       Changes in version 1.99.2                        

NEW FEATURES

  - Added comprehensive Bioconductor package infrastructure
  - Added automated GitHub Actions workflow for Bioconductor continuous
    integration
  - Added test coverage reporting and automated testing
  - Added Bioconductor-style vignettes and documentation
      - Added biocViews categorization: Software, Microbiome,
        Metagenomics, GraphAndNetwork, NetworkInference
      - Added comprehensive support documentation and issue templates
      - Implemented proper code of conduct and contribution guidelines

INFRASTRUCTURE IMPROVEMENTS

  - Added Bioconductor-specific GitHub Actions workflow (check-bioc.yml)
  - Implemented automated R CMD check with Bioconductor standards
  - Added BiocCheck integration for package validation
  - Enhanced test coverage with automated reporting
  - Added lifecycle badge indicating stable package status

BUG FIXES

  - Resolved compliance issues identified during BiocCheck
  - Enhanced error handling and package robustness

                        Changes in version 1.1.3                        

NEW FEATURES

  - Added a NEWS.md file to track changes to the package.

SIGNIFICANT USER-VISIBLE CHANGES

  - Adding other boilerplate for Bioconductor release

BUG FIXES

  - Your bug fixes. See more details at
    http://bioconductor.org/developers/package-guidelines/#news.