terraTCGAdata
OpenAccess TCGA Data on Terra as MultiAssayExperiment
Bioconductor version: 3.23 · Package version: 1.16.0
Leverage the existing open access TCGA data on Terra with well-established Bioconductor infrastructure. Make use of the Terra data model without learning its complexities. With a few functions, you can copy / download and generate a MultiAssayExperiment from the TCGA example workspaces provided by Terra.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("terraTCGAdata")Details
| Maintainer | Marcel Ramos <marcel.ramos@sph.cuny.edu> |
| Author | Marcel Ramos [aut, cre] (ORCID: <https://orcid.org/0000-0002-3242-0582>) |
| License | Artistic-2.0 |
| URL | https://github.com/waldronlab/terraTCGAdata |
| Bug Reports | https://github.com/waldronlab/terraTCGAdata/issues |
| Downloads rank | 334 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, Infrastructure, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | terraTCGAdata_1.16.0.tar.gz |
| Windows binary (x86_64) | terraTCGAdata_1.16.0.zip |
| macOS binary (arm64) | terraTCGAdata_1.16.0.tgz |
| macOS binary (x86_64) | terraTCGAdata_1.16.0.tgz |
Dependencies
Depends: AnVILGCP, MultiAssayExperiment
Imports: AnVIL, BiocFileCache, dplyr, GenomicRanges, methods, RaggedExperiment, readr, S4Vectors, stats, tidyr, TCGAutils, utils
Suggests: AnVILBase, GCPtools, knitr, rmarkdown, BiocStyle, withr, testthat (>= 3.0.0)