schex
Hexbin plots for single cell omics data
Bioconductor version: 3.23 · Package version: 1.26.0
Builds hexbin plots for variables and dimension reduction stored in single cell omics data such as SingleCellExperiment. The ideas used in this package are based on the excellent work of Dan Carr, Nicholas Lewin-Koh, Martin Maechler and Thomas Lumley.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("schex")Details
| Maintainer | Saskia Freytag <freytag.s@wehi.edu.au> |
| Author | Saskia Freytag [aut, cre], Wancheng Tang [ctb], Zimo Peng [ctb], Jingxiu Huang [ctb] |
| License | GPL-3 |
| URL | https://github.com/SaskiaFreytag/schex |
| Bug Reports | https://github.com/SaskiaFreytag/schex/issues |
| Downloads rank | 519 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, DimensionReduction, ImmunoOncology, Sequencing, SingleCell, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | schex_1.26.0.tar.gz |
| Windows binary (x86_64) | schex_1.26.0.zip |
| macOS binary (arm64) | schex_1.26.0.tgz |
| macOS binary (x86_64) | schex_1.26.0.tgz |
Dependencies
Depends: SingleCellExperiment (>= 1.7.4), ggplot2 (>= 3.2.1)
Imports: hexbin, stats, methods, cluster, dplyr, entropy, ggforce, grid, rlang, concaveman
Suggests: ggrepel, knitr, rmarkdown, testthat (>= 2.1.0), covr, TENxPBMCData, scater, Seurat, shinydashboard, iSEE, igraph, scran, tibble, scuttle