Bioc2026 Registration Open!

rsemmed

An interface to the Semantic MEDLINE database

Bioconductor version: 3.23 · Package version: 1.22.0

A programmatic interface to the Semantic MEDLINE database. It provides functions for searching the database for concepts and finding paths between concepts. Path searching can also be tailored to user specifications, such as placing restrictions on concept types and the type of link between concepts. It also provides functions for summarizing and visualizing those paths.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rsemmed")

Details

MaintainerLeslie Myint <leslie.myint@gmail.com>
AuthorLeslie Myint [aut, cre] (ORCID: <https://orcid.org/0000-0003-2478-0331>)
LicenseArtistic-2.0
URLhttps://github.com/lmyint/rsemmed
Bug Reportshttps://github.com/lmyint/rsemmed/issues
Downloads rank351
Source branchRELEASE_3_23
biocViewsAnnotation, Pathways, Software, SystemsBiology

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagersemmed_1.22.0.tar.gz
Windows binary (x86_64)rsemmed_1.22.0.zip
macOS binary (arm64)rsemmed_1.22.0.tgz
macOS binary (x86_64)rsemmed_1.22.0.tgz
Dependencies

Depends: R (>= 4.0), igraph

Imports: methods, magrittr, stringr, dplyr

Suggests: testthat, knitr, BiocStyle, rmarkdown