rqt
rqt: utilities for gene-level meta-analysis
Bioconductor version: 3.23 · Package version: 1.38.0
Despite the recent advances of modern GWAS methods, it still remains an important problem of addressing calculation an effect size and corresponding p-value for the whole gene rather than for single variant. The R- package rqt offers gene-level GWAS meta-analysis. For more information, see: "Gene-set association tests for next-generation sequencing data" by Lee et al (2016), Bioinformatics, 32(17), i611-i619, <doi:10.1093/bioinformatics/btw429>.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rqt")Details
| Maintainer | Ilya Zhbannikov <ilya.zhbannikov@duke.edu> |
| Author | Ilya Zhbannikov [aut, cre], Konstantin Arbeev [aut], Anatoliy Yashin [aut] |
| License | GPL |
| URL | https://github.com/izhbannikov/rqt |
| Bug Reports | https://github.com/izhbannikov/rqt/issues |
| Downloads rank | 406 |
| Source branch | RELEASE_3_23 |
| biocViews | GenomeWideAssociation, PrincipalComponent, Regression, Sequencing, Software, StatisticalMethod, Survival |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | rqt_1.38.0.tar.gz |
| Windows binary (x86_64) | rqt_1.38.0.zip |
| macOS binary (arm64) | rqt_1.38.0.tgz |
| macOS binary (x86_64) | rqt_1.38.0.tgz |