rnaEditr
Statistical analysis of RNA editing sites and hyper-editing regions
Bioconductor version: 3.23 · Package version: 1.22.0
RNAeditr analyzes site-specific RNA editing events, as well as hyper-editing regions. The editing frequencies can be tested against binary, continuous or survival outcomes. Multiple covariate variables as well as interaction effects can also be incorporated in the statistical models.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rnaEditr")Details
| Maintainer | Lanyu Zhang <jennyzly2016@gmail.com> |
| Author | Lanyu Zhang [aut, cre], Gabriel Odom [aut], Tiago Silva [aut], Lissette Gomez [aut], Lily Wang [aut] |
| License | GPL-3 |
| URL | https://github.com/TransBioInfoLab/rnaEditr |
| Bug Reports | https://github.com/TransBioInfoLab/rnaEditr/issues |
| Downloads rank | 436 |
| Source branch | RELEASE_3_23 |
| biocViews | DimensionReduction, Epigenetics, FeatureExtraction, GeneTarget, RNASeq, Regression, Software, Survival |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | rnaEditr_1.22.0.tar.gz |
| Windows binary (x86_64) | rnaEditr_1.22.0.zip |
| macOS binary (arm64) | rnaEditr_1.22.0.tgz |
| macOS binary (x86_64) | rnaEditr_1.22.0.tgz |
Dependencies
Depends: R (>= 4.0)
Imports: GenomicRanges, IRanges, BiocGenerics, Seqinfo, bumphunter, S4Vectors, stats, survival, logistf, plyr, corrplot