rhdf5client

Access HDF5 content from HDF Scalable Data Service

Bioconductor version: 3.23 · Package version: 1.34.2

This package provides functionality for reading data from HDF Scalable Data Service from within R. The HSDSArray function bridges from HSDS to the user via the DelayedArray interface. Bioconductor manages an open HSDS instance graciously provided by John Readey of the HDF Group.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("rhdf5client")

Details

Maintainer	Alexey Sergushichev <alsergbox@gmail.com>
Author	Samuela Pollack [aut], Shweta Gopaulakrishnan [aut], BJ Stubbs [aut], Alexey Sergushichev [aut, cre], Vincent Carey [aut]
License	Artistic-2.0
Downloads rank	505
Source branch	RELEASE_3_23
biocViews	DataImport, Infrastructure, Software

Documentation

HSDSArray -- DelayedArray backend for Remote HDF5

Download

Follow the installation instructions to use this package in your R session.

Source package	rhdf5client_1.34.2.tar.gz
Windows binary (x86_64)	rhdf5client_1.34.2.zip
macOS binary (arm64)	rhdf5client_1.34.2.tgz
macOS binary (x86_64)	rhdf5client_1.34.2.tgz

Dependencies

Depends: R (>= 3.6), methods, DelayedArray

Imports: httr, rjson, utils, data.table

Suggests: knitr, testthat, BiocStyle, DT, rmarkdown

Reverse dependencies

Imports Me (2): phantasus, phantasusLite