r3Cseq
Analysis of Chromosome Conformation Capture and Next-generation Sequencing (3C-seq)
Bioconductor version: 3.23 · Package version: 1.58.0
This package is used for the analysis of long-range chromatin interactions from 3C-seq assay.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("r3Cseq")Details
| Maintainer | Supat Thongjuea <supat.thongjuea@imm.ox.ac.uk> or <supat.thongjuea@gmail.com> |
| Author | Supat Thongjuea, MRC WIMM Centre for Computational Biology, Weatherall Institute of Molecular Medicine, University of Oxford, UK <supat.thongjuea@imm.ox.ac.uk> |
| License | GPL-3 |
| URL | http://r3cseq.genereg.net,https://github.com/supatt-lab/r3Cseq/ |
| Downloads rank | 721 |
| Source branch | RELEASE_3_23 |
| biocViews | Preprocessing, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | r3Cseq_1.58.0.tar.gz |
| Windows binary (x86_64) | r3Cseq_1.58.0.zip |
| macOS binary (arm64) | r3Cseq_1.58.0.tgz |
| macOS binary (x86_64) | r3Cseq_1.58.0.tgz |
Dependencies
Depends: GenomicRanges, Rsamtools, rtracklayer, VGAM, qvalue
Imports: methods, Seqinfo, IRanges, Biostrings, data.table, sqldf, RColorBrewer
Suggests: BSgenome.Mmusculus.UCSC.mm9.masked, BSgenome.Mmusculus.UCSC.mm10.masked, BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked, BSgenome.Rnorvegicus.UCSC.rn5.masked