projectR
Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering
Bioconductor version: 3.23 · Package version: 1.28.0
Functions for the projection of data into the spaces defined by PCA, CoGAPS, NMF, correlation, and clustering.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("projectR")Details
| Maintainer | Genevieve Stein-O'Brien <gsteinobrien@gmail.com> |
| Author | Gaurav Sharma, Charles Shin, Jared Slosberg, Loyal Goff, Genevieve Stein-O'Brien |
| License | GPL (==2) |
| URL | https://github.com/genesofeve/projectR/ |
| Bug Reports | https://support.bioconductor.org/t/projectR/ |
| Downloads rank | 538 |
| Source branch | RELEASE_3_23 |
| biocViews | BiologicalQuestion, FunctionalPrediction, GeneRegulation, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | projectR_1.28.0.tar.gz |
| Windows binary (x86_64) | projectR_1.28.0.zip |
| macOS binary (arm64) | projectR_1.28.0.tgz |
| macOS binary (x86_64) | projectR_1.28.0.tgz |
Dependencies
Depends: R (>= 4.0.0)
Imports: SingleCellExperiment, methods, cluster, stats, limma, NMF, ROCR, ggalluvial, RColorBrewer, dplyr, fgsea, reshape2, viridis, scales, Matrix, MatrixModels, msigdbr, ggplot2, cowplot, ggrepel, umap, tsne
Suggests: BiocStyle, CoGAPS, gridExtra, grid, testthat, devtools, knitr, rmarkdown, ComplexHeatmap, gplots, SeuratObject