proBAMr
Generating SAM file for PSMs in shotgun proteomics data
Bioconductor version: 3.23 · Package version: 1.46.0
Mapping PSMs back to genome. The package builds SAM file from shotgun proteomics data The package also provides function to prepare annotation from GTF file.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("proBAMr")Details
| Maintainer | Xiaojing Wang <xiaojing.wang@vanderbilt.edu> |
| Author | Xiaojing Wang |
| License | Artistic-2.0 |
| Downloads rank | 555 |
| Source branch | RELEASE_3_23 |
| biocViews | ImmunoOncology, MassSpectrometry, Proteomics, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | proBAMr_1.46.0.tar.gz |
| Windows binary (x86_64) | proBAMr_1.46.0.zip |
| macOS binary (arm64) | proBAMr_1.46.0.tgz |
| macOS binary (x86_64) | proBAMr_1.46.0.tgz |
Dependencies
Depends: R (>= 3.0.1), IRanges, AnnotationDbi
Imports: GenomicRanges, Biostrings, GenomicFeatures, txdbmaker, rtracklayer
Suggests: GenomeInfoDbData, RUnit, BiocGenerics