phenopath

Genomic trajectories with heterogeneous genetic and environmental backgrounds

Bioconductor version: 3.23 · Package version: 1.36.0

PhenoPath infers genomic trajectories (pseudotimes) in the presence of heterogeneous genetic and environmental backgrounds and tests for interactions between them.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("phenopath")

Details

Maintainer	Kieran Campbell <kieranrcampbell@gmail.com>
Author	Kieran Campbell
License	Apache License (== 2.0)
Downloads rank	627
Source branch	RELEASE_3_23
biocViews	Bayesian, GeneExpression, ImmunoOncology, PrincipalComponent, RNASeq, SingleCell, Software

Documentation

Introduction to PhenoPath

Download

Follow the installation instructions to use this package in your R session.

Source package	phenopath_1.36.0.tar.gz
Windows binary (x86_64)	phenopath_1.36.0.zip
macOS binary (arm64)	phenopath_1.36.0.tgz
macOS binary (x86_64)	phenopath_1.36.0.tgz

Dependencies

Imports: Rcpp (>= 0.12.8), SummarizedExperiment, methods, stats, dplyr, tibble, ggplot2, tidyr

LinkingTo: Rcpp

Suggests: knitr, rmarkdown, forcats, testthat, BiocStyle, SingleCellExperiment

Reverse dependencies

Suggests Me (1): splatter