pageRank
Temporal and Multiplex PageRank for Gene Regulatory Network Analysis
Bioconductor version: 3.23 · Package version: 1.22.0
Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pageRank")Details
| Maintainer | Hongxu Ding <hd2326@columbia.edu> |
| Author | Hongxu Ding [aut, cre, ctb, cph] |
| License | GPL-2 |
| URL | https://github.com/hd2326/pageRank |
| Bug Reports | https://github.com/hd2326/pageRank/issues |
| Downloads rank | 351 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneTarget, Network, Software, StatisticalMethod |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | pageRank_1.22.0.tar.gz |
| Windows binary (x86_64) | pageRank_1.22.0.zip |
| macOS binary (arm64) | pageRank_1.22.0.tgz |
| macOS binary (x86_64) | pageRank_1.22.0.tgz |
Dependencies
Depends: R (>= 4.0)
Imports: GenomicRanges, igraph, motifmatchr, stats, utils, grDevices, graphics
Suggests: bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, TFBSTools, GenomicFeatures, annotate