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mzID

An mzIdentML parser for R

Bioconductor version: 3.23 · Package version: 1.50.0

A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact the maintainer with any problems and supply an mzIdentML file so the problems can be fixed quickly.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mzID")

Details

MaintainerLaurent Gatto <laurent.gatto@uclouvain.be>
AuthorLaurent Gatto [ctb, cre] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Thomas Pedersen [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Vladislav Petyuk [ctb]
LicenseGPL (>= 2)
Downloads rank4204
Source branchRELEASE_3_23
biocViewsDataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagemzID_1.50.0.tar.gz
Windows binary (x86_64)mzID_1.50.0.zip
macOS binary (arm64)mzID_1.50.0.tgz
macOS binary (x86_64)mzID_1.50.0.tgz
Dependencies

Depends: methods

Imports: XML, plyr, parallel, doParallel, foreach, iterators, ProtGenerics

Suggests: knitr, testthat

Reverse dependencies

Imports Me (3): MSnbase, MSnID, TargetDecoy

Suggests Me (4): mzR, PepMapViz, PSMatch, RforProteomics