mosaics
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
Bioconductor version: 3.23 · Package version: 2.50.0
This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("mosaics")Details
| Maintainer | Dongjun Chung <dongjun.chung@gmail.com> |
| Author | Dongjun Chung, Pei Fen Kuan, Rene Welch, Sunduz Keles |
| License | GPL (>= 2) |
| URL | http://groups.google.com/group/mosaics_user_group |
| System Requirements | Perl |
| Downloads rank | 768 |
| Source branch | RELEASE_3_23 |
| biocViews | Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | mosaics_2.50.0.tar.gz |
| Windows binary (x86_64) | mosaics_2.50.0.zip |
| macOS binary (arm64) | mosaics_2.50.0.tgz |
| macOS binary (x86_64) | mosaics_2.50.0.tgz |
Dependencies
Depends: R (>= 3.0.0), methods, graphics, Rcpp
Imports: MASS, splines, lattice, IRanges, GenomicRanges, GenomicAlignments, Rsamtools, Seqinfo, S4Vectors
LinkingTo: Rcpp
Suggests: mosaicsExample
Enhances: parallel