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mirTarRnaSeq

mirTarRnaSeq

Bioconductor version: 3.23 · Package version: 1.20.0

mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis between mRNA and miRNA expriments. These experiments can be time point experiments, and or condition expriments.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("mirTarRnaSeq")

Details

MaintainerMercedeh Movassagh <mercedeh@ds.dfci.harvard.edu>
AuthorMercedeh Movassagh [aut, cre] (ORCID: <https://orcid.org/0000-0001-7690-0230>), Sarah Morton [aut], Rafael Irizarry [aut], Jeffrey Bailey [aut], Joseph N Paulson [aut]
LicenseMIT + file LICENSE
Downloads rank430
Source branchRELEASE_3_23
biocViewsDifferentialExpression, Regression, Sequencing, SmallRNA, Software, TimeCourse, miRNA

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packagemirTarRnaSeq_1.20.0.tar.gz
Windows binary (x86_64)mirTarRnaSeq_1.20.0.zip
macOS binary (arm64)mirTarRnaSeq_1.20.0.tgz
macOS binary (x86_64)mirTarRnaSeq_1.20.0.tgz
Dependencies

Depends: R (>= 4.1.0), ggplot2

Imports: purrr, MASS, pscl, assertthat, caTools, dplyr, pheatmap, reshape2, corrplot, grDevices, graphics, stats, utils, data.table, R.utils, viridis

Suggests: BiocStyle, knitr, rmarkdown, R.cache, SPONGE