methimpute
Imputation-guided re-construction of complete methylomes from WGBS data
Bioconductor version: 3.23 · Package version: 1.34.0
This package implements functions for calling methylation for all cytosines in the genome.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("methimpute")Details
| Maintainer | Aaron Taudt <aaron.taudt@gmail.com> |
| Author | Aaron Taudt |
| License | Artistic-2.0 |
| Downloads rank | 508 |
| Source branch | RELEASE_3_23 |
| biocViews | Coverage, DNAMethylation, Epigenetics, HiddenMarkovModel, ImmunoOncology, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | methimpute_1.34.0.tar.gz |
| Windows binary (x86_64) | methimpute_1.34.0.zip |
| macOS binary (arm64) | methimpute_1.34.0.tgz |
| macOS binary (x86_64) | methimpute_1.34.0.tgz |
Dependencies
Depends: R (>= 3.5.0), GenomicRanges, ggplot2
Imports: Rcpp (>= 0.12.4.5), methods, utils, grDevices, stats, GenomeInfoDb, IRanges, Biostrings, reshape2, minpack.lm, data.table
LinkingTo: Rcpp