loci2path
Loci2path: regulatory annotation of genomic intervals based on tissue-specific expression QTLs
Bioconductor version: 3.23 · Package version: 1.32.0
loci2path performs statistics-rigorous enrichment analysis of eQTLs in genomic regions of interest. Using eQTL collections provided by the Genotype-Tissue Expression (GTEx) project and pathway collections from MSigDB.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("loci2path")Details
| Maintainer | Tianlei Xu <tianlei.xu@emory.edu> |
| Author | Tianlei Xu |
| License | Artistic-2.0 |
| URL | https://github.com/StanleyXu/loci2path |
| Bug Reports | https://github.com/StanleyXu/loci2path/issues |
| Downloads rank | 452 |
| Source branch | RELEASE_3_23 |
| biocViews | BioCarta, Coverage, FunctionalGenomics, GeneExpression, GeneSetEnrichment, Genetics, Sequencing, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | loci2path_1.32.0.tar.gz |
| Windows binary (x86_64) | loci2path_1.32.0.zip |
| macOS binary (arm64) | loci2path_1.32.0.tgz |
| macOS binary (x86_64) | loci2path_1.32.0.tgz |
Dependencies
Depends: R (>= 3.5)
Imports: pheatmap, wordcloud, RColorBrewer, data.table, methods, grDevices, stats, graphics, GenomicRanges, BiocParallel, S4Vectors