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ivygapSE

A SummarizedExperiment for Ivy-GAP data

Bioconductor version: 3.23 · Package version: 1.34.0

Define a SummarizedExperiment and exploratory app for Ivy-GAP glioblastoma image, expression, and clinical data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ivygapSE")

Details

MaintainerVJ Carey <stvjc@channing.harvard.edu>
AuthorVince Carey
LicenseArtistic-2.0
Downloads rank394
Source branchRELEASE_3_23
biocViewsGeneExpression, Sequencing, Software, Survival, Transcription, Visualization

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageivygapSE_1.34.0.tar.gz
Windows binary (x86_64)ivygapSE_1.34.0.zip
macOS binary (arm64)ivygapSE_1.34.0.tgz
macOS binary (x86_64)ivygapSE_1.34.0.tgz
Dependencies

Depends: R (>= 3.5.0), SummarizedExperiment

Imports: shiny, survival, survminer, hwriter, plotly, ggplot2, S4Vectors, graphics, stats, utils, UpSetR

Suggests: knitr, png, limma, grid, DT, randomForest, digest, testthat, rmarkdown, BiocStyle, magick, statmod, codetools