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ipdDb

IPD IMGT/HLA and IPD KIR database for Homo sapiens

Bioconductor version: 3.23 · Package version: 1.30.0

All alleles from the IPD IMGT/HLA <https://www.ebi.ac.uk/ipd/imgt/hla/> and IPD KIR <https://www.ebi.ac.uk/ipd/kir/> database for Homo sapiens. Reference: Robinson J, Maccari G, Marsh SGE, Walter L, Blokhuis J, Bimber B, Parham P, De Groot NG, Bontrop RE, Guethlein LA, and Hammond JA KIR Nomenclature in non-human species Immunogenetics (2018), in preparation.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ipdDb")

Details

MaintainerSteffen Klasberg <klasberg@dkms-lab.de>
AuthorSteffen Klasberg
LicenseArtistic-2.0
URLhttps://github.com/DKMS-LSL/ipdDb
Bug Reportshttps://github.com/DKMS-LSL/ipdDb/issues/new
Downloads rank436
Source branchRELEASE_3_23
biocViewsAnnotationHubSoftware, DataRepresentation, GenomicVariation, SequenceMatching, Software, VariantAnnotation

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageipdDb_1.30.0.tar.gz
Windows binary (x86_64)ipdDb_1.30.0.zip
macOS binary (arm64)ipdDb_1.30.0.tgz
macOS binary (x86_64)ipdDb_1.30.0.tgz
Dependencies

Depends: R (>= 3.5.0), methods, AnnotationDbi (>= 1.43.1), AnnotationHub

Imports: Biostrings, GenomicRanges, RSQLite, DBI, IRanges, stats, assertthat

Suggests: knitr, rmarkdown, testthat