igvShiny
igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)
Bioconductor version: 3.23 · Package version: 1.8.3
This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("igvShiny")Details
| Maintainer | Arkadiusz Gladki <gladki.arkadiusz@gmail.com> |
| Author | Paul Shannon [aut], Arkadiusz Gladki [aut, cre] (ORCID: <https://orcid.org/0000-0002-7059-6378>), Karolina Scigocka [aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/gladkia/igvShiny, https://gladkia.github.io/igvShiny/ |
| Bug Reports | https://github.com/gladkia/igvShiny/issues |
| Downloads rank | 399 |
| Source branch | RELEASE_3_23 |
| biocViews | Coverage, Sequencing, ShinyApps, Software |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | igvShiny_1.8.3.tar.gz |
| Windows binary (x86_64) | igvShiny_1.8.3.zip |
| macOS binary (arm64) | igvShiny_1.8.3.tgz |
| macOS binary (x86_64) | igvShiny_1.8.3.tgz |
Dependencies
Depends: R (>= 3.5.0), GenomicRanges, methods, shiny
Imports: BiocGenerics, checkmate, futile.logger, GenomeInfoDbData, htmlwidgets, httr, jsonlite, randomcoloR, utils
Suggests: BiocStyle, GenomicAlignments, knitr, Rsamtools, rtracklayer, testthat, shinytest2, VariantAnnotation
Reverse dependencies
Imports Me (1): damidBind