groHMM
GRO-seq Analysis Pipeline
Bioconductor version: 3.23 · Package version: 1.46.0
A pipeline for the analysis of GRO-seq data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("groHMM")Details
| Maintainer | Tulip Nandu <tulip.nandu@utsouthwestern.edu> |
| Author | Charles G. Danko [aut], Minho Chae [aut], Andre Martins [ctb], W. Lee Kraus [aut, fnd], Anusha Nagari [ctb], Tulip Nandu [cre, ctb], Pariksheet Nanda [ctb] (ORCID: <https://orcid.org/0000-0001-9726-4552>) |
| License | GPL-3 |
| URL | https://github.com/Kraus-Lab/groHMM |
| Bug Reports | https://github.com/Kraus-Lab/groHMM/issues |
| Downloads rank | 694 |
| Source branch | RELEASE_3_23 |
| biocViews | Sequencing, Software |
Download
Follow the installation instructions to use this package in your R session.
| Source package | groHMM_1.46.0.tar.gz |
| Windows binary (x86_64) | groHMM_1.46.0.zip |
| macOS binary (arm64) | groHMM_1.46.0.tgz |
| macOS binary (x86_64) | groHMM_1.46.0.tgz |
Dependencies
Depends: R (>= 4.1.0), MASS, parallel, S4Vectors (>= 0.17.25), IRanges (>= 2.13.12), Seqinfo, GenomicRanges (>= 1.31.8), GenomicAlignments (>= 1.15.6), rtracklayer (>= 1.39.7)
Suggests: BiocStyle, GenomicFeatures, edgeR, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene