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globalSeq

Global Test for Counts

Bioconductor version: 3.23 · Package version: 1.40.0

The method may be conceptualised as a test of overall significance in regression analysis, where the response variable is overdispersed and the number of explanatory variables exceeds the sample size. Useful for testing for association between RNA-Seq and high-dimensional data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("globalSeq")

Details

MaintainerArmin Rauschenberger <armin.rauschenberger@uni.lu>
AuthorArmin Rauschenberger [aut, cre]
LicenseGPL-3
URLhttps://github.com/rauschenberger/globalSeq
Bug Reportshttps://github.com/rauschenberger/globalSeq/issues
Downloads rank422
Source branchRELEASE_3_23
biocViewsDifferentialExpression, DimensionReduction, ExomeSeq, ExonArray, GeneExpression, GenomeWideAssociation, MultipleComparison, RNASeq, Regression, Sequencing, Software, Transcriptomics, WholeGenome, miRNA

Documentation

Download

Follow the installation instructions to use this package in your R session.

Source packageglobalSeq_1.40.0.tar.gz
Windows binary (x86_64)globalSeq_1.40.0.zip
macOS binary (arm64)globalSeq_1.40.0.tgz
macOS binary (x86_64)globalSeq_1.40.0.tgz
Dependencies

Depends: R (>= 3.0.0)

Suggests: knitr, testthat, SummarizedExperiment, S4Vectors