ggseqalign

Minimal Visualization of Sequence Alignments

Bioconductor version: 3.23 · Package version: 1.6.0

Simple visualizations of alignments of DNA or AA sequences as well as arbitrary strings. Compatible with Biostrings and ggplot2. The plots are fully customizable using ggplot2 modifiers such as theme().

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ggseqalign")

Details

Maintainer	Simeon Lim Rossmann <simeon.rossmann@nmbu.no>
Author	Simeon Lim Rossmann [aut, cre] (ORCID: <https://orcid.org/0000-0003-0435-8221>)
License	Artistic-2.0
URL	https://github.com/simeross/ggseqalign
Bug Reports	https://github.com/simeross/ggseqalign/issues
Downloads rank	265
Source branch	RELEASE_3_23
biocViews	Alignment, MultipleSequenceAlignment, Software, Visualization

Documentation

Quickstart Guide to ggseqalign

Download

Follow the installation instructions to use this package in your R session.

Source package	ggseqalign_1.6.0.tar.gz
Windows binary (x86_64)	ggseqalign_1.6.0.zip
macOS binary (arm64)	ggseqalign_1.6.0.tgz
macOS binary (x86_64)	ggseqalign_1.6.0.tgz

Dependencies

Depends: R (>= 4.4.0)

Imports: pwalign, dplyr, ggplot2

Suggests: Biostrings, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)