ggmanh
Visualization Tool for GWAS Result
Bioconductor version: 3.23 · Package version: 1.16.0
Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide Association Study. The "ggmanh" package aims to keep the generation of these plots simple while maintaining customizability. Main functions include manhattan_plot, qqunif, and thinPoints.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ggmanh")Details
| Maintainer | John Lee <swannyy.stat@gmail.com> |
| Author | John Lee [aut, cre], John Lee [aut] (AbbVie), Xiuwen Zheng [ctb, dtc] |
| License | MIT + file LICENSE |
| Downloads rank | 449 |
| Source branch | RELEASE_3_23 |
| biocViews | Genetics, GenomeWideAssociation, Software, Visualization |
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | ggmanh_1.16.0.tar.gz |
| Windows binary (x86_64) | ggmanh_1.16.0.zip |
| macOS binary (arm64) | ggmanh_1.16.0.tgz |
| macOS binary (x86_64) | ggmanh_1.16.0.tgz |
Dependencies
Imports: gdsfmt, ggrepel, grDevices, paletteer, RColorBrewer, rlang, scales, SeqArray (>= 1.32.0), stats, tidyr, dplyr, pals, magrittr
Suggests: BiocStyle, rmarkdown, knitr, testthat (>= 3.0.0), GenomicRanges