geneplast

Evolutionary and plasticity analysis of orthologous groups

Bioconductor version: 3.23 · Package version: 1.38.0

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("geneplast")