funtooNorm
Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit
Bioconductor version: 3.23 · Package version: 1.36.0
Provides a function to normalize Illumina Infinium Human Methylation 450 BeadChip (Illumina 450K), correcting for tissue and/or cell type.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("funtooNorm")Details
| Maintainer | Kathleen Klein <kathleen.klein@mail.mcgill.ca> |
| Author | Celia Greenwood <celia.greenwood@mcgill.ca>,Stepan Grinek <stepan.grinek@ladydavis.ca>, Maxime Turgeon <maxime.turgeon@mail.mcgill.ca>, Kathleen Klein <kathleen.klein@mail.mcgill.ca> |
| License | GPL-3 |
| Downloads rank | 483 |
| Source branch | RELEASE_3_23 |
| biocViews | DNAMethylation, Normalization, Preprocessing, Software |
Download
Follow the installation instructions to use this package in your R session.
| Source package | funtooNorm_1.36.0.tar.gz |
| Windows binary (x86_64) | funtooNorm_1.36.0.zip |
| macOS binary (arm64) | funtooNorm_1.36.0.tgz |
| macOS binary (x86_64) | funtooNorm_1.36.0.tgz |
Dependencies
Depends: R (>= 3.4)
Imports: pls, matrixStats, minfi, methods, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19, GenomeInfoDb, grDevices, graphics, stats